Joost Wagenaar, PhD

Scientific Committee

Bioengineering, University of Pennsylvania

Philadelphia, PA, USA

About

Member of the PedQuEST Scientific Committee. Leads the Pennsieve data platform integration enabling secure EEG transfer, cloud-based analysis, and multicenter research infrastructure.

Research Interests

Data SciencePennsieveEEG AnalyticsBiomedical Engineering

Publications(15)

Accelerating the development of bioelectronic medicine: outcomes and innovations from the NIH SPARC initiative.

Patel B, Pikov V, Damaser MS, Boline J, Tappan SJ, Nickerson DP, Ward MP, Gunalan PK, Neufeld E, Ludwig KA, Grethe JS, Wagenaar JB, Martone ME

Bioelectronic medicine (2026) · DOI → · PubMed

Deep learning representations of human Immune Health for precision immunology.

Lee ME, Kim J, Ionita M, McKeague ML, Lee J, Nam Y, Jeong CU, Nair A, Moyo ET, Khavin I, Wang K, Mathew D, Fang V, Fensterheim BA, Pattekar A, Rangwala Z, Bar-Or A, Abramoff BA, Rhee RL, Schuster S, Huang A, Meyer N, Levy M, Garfall A, Bhoj V, Kaminski M, Naji A, Yang E, Cabanski C, Connolly J, Guercio L, Wagenaar J, Baxter AE, Maseda D, Apostolidis SA, Painter MM, Vonderheide RH, Greenplate AR, Kim D, Wherry EJ

bioRxiv : the preprint server for biology (2026) · DOI → · PubMed

A multimodal epilepsy dataset of paired 3-Tesla and 7-Tesla MRI and intracranial EEG.

Imtiaz T, Lucas A, Josyula M, Petillo N, Wagenaar J, Stein JM, Das S, Sinha N, Davis KA

Scientific data (2026) · DOI → · PubMed

Cellular immunology data enable clinical severity prediction via supervised machine learning.

Nam Y, McKeague ML, Ionita M, Lee ME, Painter M, Apostolidis S, Kim J, Woerner J, Jung SH, Orzechowski P, Wagenaar J, Greenplate AR, Wherry EJ, Kim D

iScience (2026) · DOI → · PubMed

Virtual Responsive Neurostimulation Implantation: From Intracranial Connectivity to Optimized Lead Placement.

Feys O, Walsh KG, Nix KC, Josyula M, Sinha N, Lavelle SB, Wagenaar J, Michalak A, Morrell MJ, Jeschke J, Khambhati AN, Conrad EC, Kleen JK, Litt B, Rao VR, Friedman D, Davis KA

medRxiv : the preprint server for health sciences (2026) · DOI → · PubMed

A guide to developing harmonized research workflows in a team science context

Ruiz OE, Wagenaar JB, Mehta B, Ziogas I, Swanson L, Worley KC, Cruz-Almeida Y, Johnson AJ, Boline J, Boccanfuso J, Martone ME, Haelterman NA

Exp Neurol (2025) · DOI → · PubMed

Review

Harvard Electroencephalography Database: A comprehensive clinical electroencephalographic resource from four Boston hospitals

Sun C, Jing J, Turley N, Alcott C, Kang WY, Cole AJ, Goldenholz DM, Lam A, Amorim E, Chu C, Cash S, Junior VM, Gupta A, Ghanta M, Nearing B, Nascimento FA, Struck A, Kim J, Sartipi S, Tauton AM, Fernandes M, Sun H, Bayas G, Gallagher K, Wagenaar JB, Sinha N, Lee-Messer C, Silvers CT, Gunapati B, Rosand J, Peters J, Loddenkemper T, Lee JW, Zafar S, Westover MB

Epilepsia (2025) · DOI → · PubMed

Cardiac ArrestEEGMachine LearningEducationEpilepsyPharmacology

The SPARC DRC: Building a Resource for the Autonomic Nervous System Community

Osanlouy M, Bandrowski A, de Bono B, Brooks D, Cassarà AM, Christie R, Ebrahimi N, Gillespie T, Grethe JS, Guercio LA, Heal M, Lin M, Kuster N, Martone ME, Neufeld E, Nickerson DP, Soltani EG, Tappan S, Wagenaar JB, Zhuang K, Hunter PJ

Front Physiol (2021) · DOI → · PubMed

Cardiac Arrest

IRIS: A Modular Platform for Continuous Monitoring and Caretaker Notification in the Intensive Care Unit

Baldassano SN, Roberson SW, Balu R, Scheid B, Bernabei JM, Pathmanathan J, Oommen B, Leri D, Echauz J, Gelfand M, Bhalla PK, Hill CE, Christini A, Wagenaar JB, Litt B

IEEE J Biomed Health Inform (2020) · DOI → · PubMed

Neurocritical CareEEGBiomarkers

The effect of increased intracranial EEG sampling rates in clinical practice

Davis KA, Devries SP, Krieger A, Mihaylova T, Minecan D, Litt B, Wagenaar JB, Stacey WC

Clin Neurophysiol (2017) · DOI → · PubMed

EEGSeizures

Crowdsourcing seizure detection: algorithm development and validation on human implanted device recordings

Baldassano SN, Brinkmann BH, Ung H, Blevins T, Conrad EC, Leyde K, Cook MJ, Khambhati AN, Wagenaar JB, Worrell GA, Litt B

Brain (2017) · DOI → · PubMed

EEGSeizures

Correction: Forecasting Seizures Using Bivariate Intracranial EEG Measures and SVM in Naturally Occurring Canine Epilepsy

Brinkmann BH, Patterson EE, Vite C, Vasoli VM, Crepeau D, Stead M, Howbert JJ, Cherkassky V, Wagenaar JB, Litt B, Worrell GA

PLoS One (2016) · DOI → · PubMed

EEGSeizuresMachine LearningEpilepsy

Millimeter-scale epileptiform spike propagation patterns and their relationship to seizures

Vanleer AC, Blanco JA, Wagenaar JB, Viventi J, Contreras D, Litt B

J Neural Eng (2016) · DOI → · PubMed

EEGSeizures

Forecasting Seizures Using Intracranial EEG Measures and SVM in Naturally Occurring Canine Epilepsy

Brinkmann BH, Patterson EE, Vite C, Vasoli VM, Crepeau D, Stead M, Howbert JJ, Cherkassky V, Wagenaar JB, Litt B, Worrell GA

PLoS One (2015) · DOI → · PubMed

EEGSeizuresMachine LearningPharmacologyEpilepsy

Data integration: Combined imaging and electrophysiology data in the cloud

Kini LG, Davis KA, Wagenaar JB

Neuroimage (2015) · DOI → · PubMed

EEGEpilepsy

Conference Abstracts(1)

Development of a Multicenter EEG Research Consortium and Data Platform to Advance Pediatric Quantitative EEG Research

Press CA, Benedetti GM, Harrar DB, Farias-Moeller R, Tomko S, Jayakar A, Appavu B, Morgan LA, Castillo-Pinto C, Thomas AX, Rau S, Fulton F, Parikh D, Abend NS, Hahn C, Riviello J, Ganesan R, De Freitas D, Dare Y, Wagenaar J

American Epilepsy Society Annual Meeting (2025) · poster

EEGEpilepsyPedQuESTqEEG